Emerging Technologies in Single Cell Research
Proudly supported by
Speakers
CNRS/Institut Curie, FR
Berlin Institute for Medical Systems Biology, DE
EMBL, DE
Department of Human Genetics, KU Leuven, BE
Broad Institute of Harvard and MIT, US
Illumina, US
EPFL, CH
10x Genomics, US
Weizmann Institute of Science, IL
University of Zurich, CH
Booths
10X Genomics
Reaching new levels of biological insight with single cell and spatial multiomics
Illumina
Our mission is to improve human health by unlocking the power of the genome
Samplix
Samplix - Xdrop
BD
A leading provider of flow cytometry solutions and services to support researchers and clinicians who understand disease and improve care.
Genscript
All about Genes, Proteins, Antibodies, and Cells
Mission Bio
Unravel the Complexity of Cancer
Poster 1 - Aldo Abarca-Ortega
Numerical analysis of effective pressure on microfluidic aspiration of a single cell before constriction
Poster 2 - Tamim Abdelaal
SpaGE: Spatial Gene Enhancement using scRNA-seq
Poster 3 - Aline Acke
Expansion microscopy as a tool to study distribution patterns of chromatin binding proteins in relation to epigenetic modifications with retained spatial information
Poster 4 - Juan Bernal-Tamayo
Reconstruction of Dynamical Cellular Non-Gradient Energy Landscapes from Single Cell Transcriptional States and Velocities
Poster 5 - Pascal Bielefeld (Presented by: Benedikt Nilges)
Cell type-specific vulnerability to traumatic brain injury in the hippocampal neural stem cell niche
Poster 6 - Thorarinn Blondal (Presented by: Peter Mouritzen)
Uniform Whole Genome Amplification in droplets using Samplix Xdrop™ technology
Poster 7 - Carmen Bravo González-Blas
Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics in the mouse liver
Poster 8 - Dylan Cable
Robust decomposition of cell type mixtures in spatial transcriptomics
Poster 9 - Curtis Cai
Investigating recipient immune and CAR T-cell populations during CAR-T therapy with multi-omics
Poster 10 - Laura Capolupo
Single-Cell Lipidomics reveals a role for Cell-to-Cell Lipid Heterogeneity in Cell Fate Determination
Poster 11 - Alexis Coullomb
Neighbors Aggregation Statistics for spatial omics data
Poster 12 - Eva Cuypers
Mass spectrometry imaging and profiling of single cells: application in breast cancer research
Poster 13 - Kristofer Davie
VSN Pipelines and SCope: A framework for comprehensive analysis and visualisation of single cell data and its use to build the Fly Cell Atlas
Poster 14 - Louise Deconinck
Comparing branching patient trajectories using trajectory alignment methods
Poster 15 - Marie Depuydt
Microanatomy of the human atherosclerotic plaque by single-cell transcriptomics
Poster 16 - Dalia Dhingra
A multimodal single-cell workflow to interrogate cellular responses to cancer therapy
Poster 17 - Lena Duchateau
In-situ sequencing of ABCA7 in Alzheimer disease brain
Poster 18 - Marc Elosua-Bayes
SPOTlight: Seeded NMF regression to Deconvolute Spatial Transcriptomics Spots with Single-Cell Transcriptomes
Poster 19 - Sarah Ennis
Changes in gene expression among myeloid cells during AML progression
Poster 20 - Almudena Espin Perez
Tumor dissociation methods reveal potential distinct fibroblast groups
Poster 21 - Elia Fernandez Gallardo
Transcriptomic signatures of genomic instability during human preimplantation embryo development characterized at single cell resolution by G&T-seq
Poster 22 - Christopher Flerin
Benchmarking of single cell ATAC-seq technologies yields insight into reproducibility
Poster 23 - Swann Floc'hlay
Unravelling regulatory logic and combinations of transcription factors governing the wound response program
Poster 24 - Amelie Franken
Keeping exhausted T-cells in check in COVID-19
Poster 25 - Federico Gaiti
Epigenetic encoding, heritability and plasticity of glioma transcriptional cell states
Poster 26 - Jeroen Gilis
Scalable Differential Transcript Usage Analysis for Bulk and Single-Cell RNA-sequencing Applications
Poster 27 - Blanca González-Bermúdez
Exploring the Relationships between Mechanical Behavior and Internal Ordering on T Cells through Integrative Single-Cell Analyses
Poster 28 - Bruno Guillotin
Tracing cell identity switches during root regeneration
Poster 29 - Saurabh Gulati
Accurate and sensitive subclone identification in scDNAseq datasets
Poster 30 - Gabriel H. Negreira
Exploring the evolution and adaptive role of mosaic aneuploidy in clonal Leishmania donovani populations with high throughput single cell genome sequencing
Poster 31 - Ling Hai
ieCS: interactive explorer of single cell cluster similarity
Poster 32 - Philipp Janssen
Acute myeloid leucemia cells show a reduced growth rate after chemotherapy
Poster 33 - Jasper Janssens
Mapping cell types and gene regulatory networks in the developing fly brain using single-cell multi-omics
Poster 34 - Aryan Kamal
Reconstruction and evaluation of a cell type specific gene regulatory network using chromatin accessibility and RNAseq data
Poster 35 - Atefeh Kazeroonian
Early fate decisions and inheritance in T cell responses informed by in vitro continuous imaging
Poster 36 - Yuchen Liu
Reconstruction of immune phenotype from demultiplexed single cell transcriptome
Poster 37 - Mohammad Lotfollahi
Query to reference single-cell integration with transfer learning
Poster 38 - Leif Ludwig
Scalable, multimodal profiling of chromatin accessibility, protein levels and mitochondrial genotypes in single cells
Poster 39 - Sandra Maréchal
Mapping the pathways of homeostatic dendritic cell maturation
Poster 40 - Irina Matetovici
Benchmarking single-cell and single- nucleus RNA-seq technologies
Poster 41 - Laura Mincarelli
Integrated short and long read single cell RNA-sequencing reveals cell type specific isoform expression and novel signature of ageing in haematopoietic stem cell and progenitors
Poster 42 - Maria Mircea
A measure to determine clusterability in single cell RNA-seq data
Poster 43 - Larisa Morales-Soto
scMomentum: Inference of Cell-Type-Specific Regulatory Networks and Developmental Landscapes from Single-Cell Transcriptomics Data
Poster 44 - Benedikt Nilges
Quantitative spatial analysis of 55 genes to study the effect of amyloid pathology in Alzheimer’s Disease (AD)
Poster 45 - Natalia Ochocka
Single-cell RNA sequencing reveals functional heterogeneity and sex differences of glioma-associated brain macrophages
Poster 46 - Xinhai Pan
Simulating multi-modality single cell data for temporal analysis
Poster 47 - Saurabh Parikh
Method to identify phenotypic variations from genotypic changes
Poster 48 - Gabriele Partel
Unsupervised detection of cellular domains from spatial gene expression signatures by spage2vec
Poster 49 - Liliana Pineros
Studying the embryonic cell cycle in artificial cells using microfluidics
Poster 50 - Benedetto Polimeni
Deciphering Trasposable Elements transcriptional signature in Tumor-Infiltrating T Lymphocytes at single cell resolution
Poster 51 - Suresh Poovathingal (Presented by: Florian De Rop)
HyDrop: a novel droplet microfluidics platform for single-cell genomics
Poster 52 - Eszter Posfai (Presented by: Adrian Janiszewski)
Evaluating totipotency using criteria of increasing stringency
Poster 53 - Egle Ramelyte (Presented by: Aizhan Tastanova)
Single cell profiling of cutaneous B-cell lymphoma treated with T-VEC
Poster 54 - Maryam Rezaei (Presented by: Robert Weingarten)
A functional phenomics approach reveals the exchange of material between breast cancer and endothelial cells at single-cell resolution in a 3D co-culture system
Poster 55 - Andrea Sacchetti (Presented by: Mathijs Verhagen)
Phenotypic plasticity and partial EMT underlie local invasion and distant metastasis in colon cancer
Poster 56 - Mirca Saurty-Seerunghen
Metabolic modules distinguishing glioblastoma cells in distinct functioning states identified from single cell analyses
Poster 57 - Marjolein Schluck (Presented by: Bas Pilzecker)
Dictating phenotype, function and fate of human T cells through agonistic T cell receptor and co-stimulatory antibodies bound to immuno-filaments
Poster 58 - Stefano Secchia
Putting some muscle into the dissection of single cell regulatory landscapes during embryogenesis
Poster 59 - Ruth Styfhals
Cell type diversity in a developing octopus brain
Poster 60 - Irene Talon
Reconstructing gene regulatory networks during IPSC reprogramming and X chromosome reactivation
Poster 61 - Ibrahim I. Taskiran
Deep learning of Drosophila brain enhancers leveraged by single-cell RNA and ATAC-seq
Poster 62 - Nicola Thrupp
Single nucleus RNA-Seq is not suitable for detection of microglial activation genes in humans
Poster 63 - Sergey Ulianov
Single-nucleus Hi-C analysis of the Drosophila genome folding
Poster 64 - Bora Uyar (Presented by: Daniel Palmer)
Single-Cell Analyses of Aging, Inflammation and Senescence
Poster 65 - Lies Van Horebeek
Targeted single-cell transcriptomics for studying genotype-phenotype relationships
Poster 66 - Pierre Van Mol
Discriminating Mild from Critical COVID-19 by Innate and Adaptive Immune Single-cell Profiling of Bronchoalveolar Lavages
Poster 67 - Alexis Vandenbon
SingleCellHaystack: A clustering-independent method for finding differentially expressed genes in single-cell transcriptome data
Poster 68 - Marisa Vanheusden
Expanding the toolbox for the subcellular mapping of multi-omic biomarkers in expansion microscopy
Poster 69 - Sebastiaan Vanuytven
Single cell Genome-and-Transcriptome sequencing without upfront whole-genome amplification reveals cell state plasticity of melanoma subclones
Poster 70 - Parul Varma
Single cell genomics identifies cell-type specific molecular changes in precision-models of genetic epilepsies
Poster 71 - Daan Verhaege
The role of the choroid plexus in immune surveillance of the brain
Poster 72 - Beate Vieth
Power simulations for cell type identification from single cell RNA-seq data
Poster 73 - Shu Wang
Amplicon design for single cell targeted sequencing assays using machine learning
Poster 74 - Gang Wen
Evaluation of direct grafting strategies in Expansion Microscopy
Poster 75 - Jasper Wouters
Robust gene expression programs underlie recurrent cell states and phenotype switching in melanoma
Poster 76 - Jin Ye
Deep Characterization of the cellular diversity in Bone Marrow microenvironment
Poster 77 - Ziqi Zhang (Presented by: Xiuwei Zhang)
Inference of multiple trajectories in single cell RNA-Seq data from RNA velocity
Poster 78 - Yun Zhang
FR-Match: A Cell Type Matching Framework for Single Cell RNA Sequencing Data Using the Friedman-Rafsky Non-parametric Test
Poster 80 - Marius Lange
CellRank maps the fate of single cells